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CytoCell fluorescence in situ hybridisation (FISH) logo.

Product summary

  • Chromosomes
    XY181321
  • Labels          
  • Disease focus Constitutional
  • Product code CE-LPA 001-S (5 tests) CE-LPA 001 (10 tests) CE-LPA 001-30 (30 tests) CE-LPA 001-50 (50 tests)
  • Regulatory status In vitro diagnostic.
Cytocell Catalogue Probe Packaging With Amber Tube
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Probe design

Overview

Probe specification

LPA 002 Prenatal X, Y and 18 Enumeration Probe

  • X centromere, Xp11.1 – q11.1 (DXZ1), Green
  • Y centromere, Yp11.1 – q11.1 (DYZ3), Orange
  • 18 centromere, 18p11.1 – q11.1 (D18Z1), Aqua

The probe component LPA 002 is a mixture of green, orange and aqua directly labelled fluorescent DNA probes:

  • The green DXZ1 probe directly labels the alpha satellite DNA sequences at the DXZ1 region of the X chromosome.
  • The orange DYZ3 probe directly labels the alpha satellite DNA sequences at the DYZ3 region of the Y chromosome.
  • The aqua D18Z1 probe directly labels the alpha satellite DNA sequences at the D18Z1 region of chromosome 18.

 

LPA 003 Prenatal 13 and 21 Enumeration Probe

  • 13 unique sequence, 13q14.2, Green
  • 21 unique sequence, 21q22.13, Orange

The probe component LPA 003 is a mixture of green and orange directly labelled fluorescent DNA probes containing unique sequences:

  • The green probe mix contains a 124kb probe and a 416kb probe at 13q14.2 that spans the ITM2B, RB1 and RCBTB2 genes, including markers D13S1195, D13S1155, D13S153, and D13S1218.
  • The orange probe mix contains a 348kb probe, 288kb probe and 106kb probe at 21q22.13 that spans the DYRK1A, KCNJ6, DSCR4 and DSCR8 genes, including markers D21S270, D21S337, D21S1238, D21S1917 and D21S341.

Probe information

Molecular cytogenetic analysis plays a pivotal role in the prenatal evaluation of high-risk pregnancies, enabling the accurate identification of chromosomal abnormalities and the assessment of recurrence risk. The most common chromosomal abnormalities are aneuploidies, defined as an abnormal chromosome copy number, with affected individuals typically presenting with trisomy (three copies of a chromosome) or monosomy (single copy of a chromosome).1

Well-known, clinically significant aneuploidies include trisomies 13, 18, and 21, as well as monosomy X. These abnormalities represent major contributors to developmental disorders and adverse reproductive outcomes and are among the most common indications for invasive prenatal diagnosis.2

Trisomy 21 (Down syndrome), the most common viable autosomal trisomy, is characterised by cognitive impairment, congenital cardiac anomalies, and multisystem morbidity, and remains a key indication for prenatal genetic testing.3,4

Trisomy 13 (Patau syndrome) is characterised by brain malformations (holoprosencephaly), facial dysmorphism, ocular anomalies, postaxial polydactyly, visceral malformations (cardiopathy) and severe psychomotor retardation.5

Trisomy 18 (Edwards syndrome) is associated with severe congenital malformations, high perinatal mortality, and well-defined ultrasonographic phenotypes, underscoring the necessity for accurate prenatal detection and genetic confirmation.6,7

Monosomy X (Turner syndrome), also referred to as congenital ovarian hypoplasia syndrome, is the most common sex chromosomal abnormality in females and results from complete or partial absence of one X chromosome.8

Prenatal diagnosis is offered in high-risk pregnancies at increased risk of chromosomal abnormalities such as trisomy 13, 18, 21, and monosomy X. FISH is a validated molecular cytogenetic method for rapid detection and enumeration of chromosome copy number in interphase nuclei. FISH enables targeted detection of common aneuploidies and provides rapid results to support clinical decision-making and is widely used in modern aneuploidy diagnostics, particularly where prompt confirmation of chromosome copy number status is required.9,10,11

 

Intended purpose

The CytoCell® Prenatal Enumeration Probe Kit is a qualitative, non-automated, fluorescence in situ hybridisation (FISH) test used to detect the chromosome Xp11.1-q11.1, Yp11.1-q11.1 and 18p11.1-q11.1 alpha centromeric regions, and the chromosome 13q14.2 and 21q22.1 regions in Carnoy’s solution (3:1 methanol/acetic acid) fixed cells derived from amniotic fluid samples, in enumerating chromosomes X, Y, 13, 18 and 21 in high risk pregnancies where Turner, Patau, Edwards or Down syndrome are suspected.

 

Indications for use

This device is designed as an adjunct to other clinical and laboratory tests in recognised diagnostic and clinical care pathways, such as ultrasound screening and biochemical testing, where knowledge of the copy number status of the chromosome Xp11.1-q11.1 and 18p11.1-q11.1 alpha centromeric regions, the chromosome 13q14.2 and 21q22.1 regions would be important for patient management.

 

Limitations

This device is designed to detect chromosomal material which includes the centromeric regions covered by the green, orange and aqua clones in the Prenatal X, Y and 18 Enumeration Probe component, for chromosomes X, Y and 18 respectively. Genomic gains or losses outside these regions, or partial losses or gains of these regions may not be detected with this device.

This device is also designed to detect chromosomal material which includes the chromosome 13q14.2 and 21q22.1 regions covered by the green and orange clones in the Prenatal 13 and 21 Enumeration Probe component. Genomic gains or losses outside these regions, or partial losses or gains of these regions may not be detected with this product.

This device is not intended for: use as a stand-alone diagnostic, companion diagnostic, population-based screening, near-patient testing, or self-testing.

This device has not been validated for sample types, disease types, or purposes outside of those stated in the intended purpose.

This device has not been validated for use in detecting gains of chromosome X and/or Y.

This device is intended as an adjunct to other diagnostic laboratory tests and therapeutic action should not be initiated on the basis of the FISH result alone. Reporting and interpretation of FISH results should be performed by suitably qualified staff, consistent with professional standards of practice, and should take into consideration other relevant test results, clinical and diagnostic information. This device is intended for laboratory professional use only. Failure to adhere to the protocol may affect the performance and lead to false positive/negative results.

Product documentation

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References

  1. Alliance G,(2010). Chromosomal Abnormalities [Internet]. https://www.ncbi.nlm.nih.gov/books/NBK132134/.
  2. Dey M, et al., (2013). Prenatal screening methods for aneuploidies. North American Journal of Medical Sciences.
  3. Antonarakis SE, Strydom A., (2020). Down Syndrome. Nature Reviews Disease Primers.
  4. Orphanet: Down syndrome [Internet]. www.orpha.net. Available from: https://www.orpha.net/en/disease/detail/870.
  5. Orphanet: Trisomy 13 [Internet]. www.orpha.net. Available from: https://www.orpha.net/en/disease/detail/3378.
  6. Pyle AK, et al. (2025) Guidance for Caring for Infants and Children With Trisomy 13 and Trisomy 18: Clinical Report. PEDIATRICS.
  7. Balasundaram P, et al. (2023). Edwards syndrome. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan–. Updated 2025 Feb 15. Available from: https://www.ncbi.nlm.nih.gov/books/NBK570597/.
  8. Shankar Kikkeri N, et al,. (2023). Turner Syndrome; Available from: https://www.ncbi.nlm.nih.gov/books/NBK554621/.
  9. Best Practice Guidelines (2024). The Association for Clinical Genomic Science (ACGS). Cytogenetics Constitutional Guidelines.
  10. NHS England - National genomic test directory for rare and inherited disease. Available from: https://www.england.nhs.uk/publication/national-genomic-testdirectories/
  11. Silva M. et al. (2019) European guidelines for constitutional cytogenomic analysis. European Journal of Human Genetics.
  12. Arsham, MS., Barch, MJ. and Lawce HJ. (eds.) (2017) The AGT Cytogenetics Laboratory Manual. New Jersey: John Wiley & Sons Inc. References
  13. Mascarello JT, Hirsch B, Kearney HM, et al. Section E9 of the American College of Medical Genetics technical standards and guidelines: fluorescence in situ hybridization. Genet Med. 2011;13(7):667-675.
  14. Wiktor AE, Dyke DLV, Stupca PJ, Ketterling RP, Thorland EC, Shearer BM, Fink SR, Stockero KJ, Majorowicz JR, Dewald GW. Preclinical validation of fluorescence in situ hybridization assays for clinical practice. Genetics in Medicine. 2006;8(1):16–23.